According to Trivelpiece, the inter-agency competition that
overtook the DOE’s initial lead in the project represented the
American science establishment at its best: not always pretty
or the most efficient, but highly competitive and productive.
“The right thing, from my point of view, happened for the
United States as a result of the tiff between NIH and DOE,”
says Trivelpiece. “If what we did at DOE caused NIH to wake
up and do what it should have done to begin with, I’m very
pleased with the outcome of that. They just didn’t have
the same ensemble of resources that the DOE labs did.”
In fact, an edge in high-performance computing would
continue to create controversy for the HGP, this time between
the public and private human genome sequencing efforts.
Just as DOE scientists had recognized the power of
supercomputing to decipher the human genome, Craig
Venter and eventually Celera, the company he founded,
upped the ante by using a computationally intensive “shotgun”
approach to sequencing the human genome. The technique
involved the previously unthinkable notion of shredding the
entire human genome, sequencing the pieces using 300
state-of-the-art automated sequencing machines, and then
reassembling this DNA jigsaw puzzle using the world’s
fastest supercomputers.
“If Craig Venter hadn’t come on the scene, if there hadn’t
been that public-private competition, there’s no way that the
project would be finished today,” says DeLisi. “It would have
taken at least another decade, because the economy had
turned uncertain.”
On January 8th, 2001, Charles DeLisi received the Presidential
Citizens Medal from President Bill Clinton recognizing his
role as the first government scientist to conceive and outline
the feasibility, goals, and parameters of the Human
Genome Project.
In presenting the honor, President Clinton noted that
“Charles DeLisi’s imagination and determination helped to
ignite the revolution in sequencing that would ultimately
unravel the code of human life itself. Thanks to his vision
and leadership, in the year 2000 we announced the
complete sequencing of the human genome. Researchers
are now closer than ever to finding therapies and cures for
ailments once thought untreatable.”
Al Trivelpiece, who left his role as Director of the DOE’s
Office of Energy Research in 1987, had attended the formal
announcement in 2000 of the completion of the first stage of
the HGP.
In both cases, the public recognition was welcome, but
beyond this was the lasting experience — as exemplified by
Trivelpiece’s treasured 92-word memo — of having been
involved in launching a project that didn’t just achieve the
seemingly impossible, but more. It changed the nature
of biology.
“Seeing this cultural shift makes me personally feel good.
I spent a good part of my career basically fighting to have
mathematics and computational methods accepted in the
biological sciences,” says DeLisi.
Computational biology is now a core part of both the best
computer science and biology programs, with joint graduate
degrees now being offered at many universities. Ironically,
concern over the reductionist role of a mathematical and
computational approach to biology has led, in part, to the
opposite — an explosion in biomolecular systems and
complexity studies thanks to the information and technology
evolving from the HGP. And the HGP has also been the engine
for U.S. leadership in the biotech industry, one seamlessly
combining biology and high-performance computers.
And perhaps there’s nothing more telling of the scientific and
technological revolution unleashed by the HGP than the fact
that in October 2003, less than 20 years after the start of the
HGP, Santa Clara, California-based Affymetrix, Inc. introduced
a new biological probe technology with the entire protein
coding content of the human genome — on a chip the size
of a thumbnail.
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